Summary
Cotton fiber is
an important natural fiber for the textile industry. The number of fiber
initials determines the lint percentage, which is an important factor for
cotton fiber yield. Although fiber development has been described by
transcriptomic analysis, the mechanism by which the long non-coding RNA
manipulate the initiation of lint and fuzz fibers remains unknown. In this
study, three lines with different lint percentages were developed by crossing
Xu142 with its fiberless mutant Xu142 fl. We collected the
epidermal cells from the ovules with attached fibers at 0 and 5 days
post-anthesis (DPA) from Xu142, the fiberless mutant Xu142 fl and the three lint percent diversified lines
for deep transcriptome sequencing. A total of 2,641 novel genes, 35,802 long
non-coding RNAs (lncRNAs) and 2,262 circular RNAs (circRNAs) were identified,
of which 645 lncRNAs were preferentially expressed in the fiberless mutant
Xu142 fl and 651 lncRNAs were preferentially expressed
in the fiber-attached lines. We demonstrated the functional roles of the three
lncRNAs in fiber development via a virus-induced gene silencing (VIGS) system.
Our results showed that silencing XLOC_545639 and XLOC_039050 in Xu142 fl increased the number of fiber initials on the
ovules, but silencing XLOC_079089 in Xu142 resulted in a short fiber phenotype.
This study established the transcriptomic repertoires in cotton fiber
initiation and provided evidence for the potential functions of lncRNAs in
fiber development.
DOI: 10.1111/pbi.12844 IF=7.443