系谱分析

PAUP   

http://onyx.si.edu/PAUP/

EBI ClustalW analysis

http://www.ebi.ac.uk/Tools/msa/clustalw2/

GCG package    

http://www.gcg.com/

PHYLIP      

http://evolution.genetics.washington.edu/phylip.html

MEGA

http://www.megasoftware.net

TreeView

http://taxonomy.zoology.gla.ac.uk/rod/treeview.html

基因结构预测分析

NCBI ORF Finder

http://www.ncbi.nlm.nih.gov/gorf/gorf.html

FGENESH

http://linux1.softberry.com/berry.phtml?topic=fgenesh&group=programs&subgroup=gfind

Augustus

http://bioinf.uni-greifswald.de/augustus/submission

GENSCAN 

http://genes.mit.edu/GENSCAN.html

http://redb.ncpgr.cn/modules/redbtools/genscan.php

http://bioweb.pasteur.fr/seqanal/interfaces/genscan-simple.html

GeneMark

http://opal.biology.gatech.edu/GeneMark/eukhmm.cgi

CENSOR (Repeat sequence)

http://www.ebi.ac.uk/Tools/censor/

RepeatMasker

http://www.repeatmasker.org/cgi-bin/WEBRepeatMasker

Repeats

http://bioweb.pasteur.fr/seqanal/interfaces/repeats.html

果蝇启动子分析

http://fruitfly.org/seq_tools/other.html

转录因子数据库

TRANSFAC

http://www.gene-regulation.com/cgi-bin/pub/databases/transfac/search.cgi

PlantTFDB

http://planttfdb.cbi.pku.edu.cn/

PlnTFDB

http://plntfdb.bio.uni-potsdam.de/v3.0/

DBD: Transcription factor prediction database

http://dbd.mrc-lmb.cam.ac.uk/DBD/index.cgi?Home